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copy number
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2
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9
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2.5k
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Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.3 years ago by
smcnulty
• 0
1
vote
1
reply
1.2k
views
Batch Correction and Normalization for champ.CNA
bioconductor
ChAMP
copy number
batch effect
normalization
updated 7.2 years ago by
rasmus.rydbirk
▴ 10 • written 7.2 years ago by
apmishra
• 0
0
votes
0
replies
1.0k
views
champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP
champ
copy number
7.3 years ago
apmishra
• 0
0
votes
0
replies
953
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
9.2 years ago
kforner
• 0
0
votes
0
replies
768
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
7.0 years ago
kitcurtius
• 0
0
votes
1
reply
1.6k
views
how to analyze CNV data
copy number
6.9 years ago
mms140130
• 0
0
votes
0
replies
755
views
cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
4.3 years ago
liorglic
▴ 10
7 results • Page
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Comment: recount3 problem downloading data from source sra
by
PABLO ANTONIO
• 0
Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…
Comment: seqlevelsStyle() not working
by
websterdelacruz2087055
• 0
Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…
Comment: slingshot: error with plot3d.SlingshotDataSet
by
Happiness
• 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Votes
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: recount3 problem downloading data from source sra
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